echolocatoR 3.0.0

echolocatoR 3.0.0

Major release: full echoverse restoration and modernization.

Highlights

• All 15 echoverse packages passing R CMD check on Ubuntu, macOS, and Windows
• ggplot2 API migration: aes_string() → aes(.data[[]]) across echoplot
• Modular architecture: each echoverse subpackage independently installable and testable
• Comprehensive test coverage: new test suites added across the suite
• FINEMAP on Apple Silicon: x86_64 binary support with automatic dylib management
• PAINTOR annotations: rewritten in pure R (was Python 2.7)
• POLYFUN parametric mode: fixed filename pattern mismatch
• echoverse status dashboard: dynamic badge table in README showing CI, coverage, and version for all packages

Breaking changes

• echoannot: XGR moved from Imports to Suggests (use requireNamespace("XGR"))
• catalogueR: requires R >= 4.1; removed unused imports (echoconda, stringr, utils, rlang)
• echofinemap: Rfast moved to Suggests; downloadR added to Imports

Infrastructure

• Canonical rworkflows.yml across all repos: write-all permissions, ghcr.io Docker, GITHUB_TOKEN, r: auto
• All .DS_Store files removed from tracking
• inst/CITATION modernized: citEntry → bibentry, textVersion added

For the full list of changes per package, see the restoration details.