0.33.1

What's Changed

• Relevel a factor column when adding a subset of current factors by @cgiachalis in #844
• Reset timestamp slots for tiledb_array_open_at() by @cgiachalis in #842
• Update TileDB Array to 2.29.1 by @jp-dark in #851
• allow osVersion to be NULL by @MichaelChirico in #850
• TileDB-R 0.33.1 by @ihnorton in #852

New Contributors

• @jp-dark made their first contribution in #851

Full Changelog: 0.33.0...0.33.1

0.33.0

• This release of the R package builds against TileDB 2.29.0, and has also been tested against earlier releases as well as the development version

Improvements

• Schema-dump output is no longer truncated in the case that there are any null fill values in the schema (@johnkerl in #825)

• tiledb_attr() now prints the attribute object as expected and documentation has been corrected (@cgiachalis in #823)

• tiledb_attr() now works when setting ncells=NA to signal variable length (@johnkerl in #830)

• tiledb_array() now emits the correct error message when using selected_points argument (@cgiachalis in #833)

• tiledb_group_open() now respects and defaults to the first option in type argument (@cgiachalis in #838)

• tiledb_config_unset() now correctly returns the modified configuration object (@cgiachalis in #841)

Documentation

• The package documentation website was updated (@cgiachalis in #822, #826)

0.32.0

What's Changed

• Use TileDB Embedded 2.28.0-rc0 by @johnkerl in #818
• Use core 2.28.0 by @johnkerl in #820
• TileDB-R 0.32.0 by @johnkerl in #821

Full Changelog: 0.31.1...0.32.0

0.31.1

What's Changed

• Allow parse_query_condition() to work on dimensions when an array is passed
• Add tiledb_vfs_copy_dir(), a wrapper for the vfs_copy_dir() function
• Print values for tiledb_schema_get_types() and tiledb_schema_get_names() #805
• Add tiledb_array_is_open_for_reading()/writing() #806
• Fix static-linking checks for R >= 4.5

Full Changelog: 0.31.0...0.31.1

0.31.0

What's Changed

• Rename master to main in artifacts by @johnkerl in #763
• Update README by @ihnorton in #764
• Run clang-format on non-autogen C++ source code by @johnkerl in #765
• Update docs with correct S4 methods by @mojaveazure in #766
• Update unit tests to expect dense current domain by @johnkerl in #768
• Fix CI for #768 by @johnkerl in #770
• Support parentheses in query conditions by @johnkerl in #771
• Update DESCRIPTION and NEWS.md by @johnkerl in #773
• memory alloc: Accomodate zero buffer size estimate v2 by @johnkerl in #777
• Apply styler::style_pkg() by @johnkerl in #778
• Provide access to TileDB shared libraries in downstream packages by @mojaveazure in #782
• Use core 2.27.0 by @johnkerl in #785
• Use core 2.27.0 in valgrind CI as well by @johnkerl in #786
• TileDB-R 0.31.0 by @johnkerl in #787

Full Changelog: 0.30.2...0.31.0

0.30.2

What's Changed

• Fix #758: "Can't read domain for dimensions of type UINT16" by @johnkerl in #759
• Fix MacOS rpath for local-core corner case by @johnkerl in #760
• Release 0.30.2 using TileDB Embedded 2.26.2 by @ihnorton in #761
• Update pkgdown generated files for 0.30.2 by @ihnorton in #762

Full Changelog: 0.30.1...0.30.2

0.30.1

Release 0.30.1 of the R package builds by default against TileDB Embedded 2.26.1, and has also been tested against earlier releases as well as the development version.

tiledb 0.30.1

• This release of the R package builds against TileDB 2.26.1, and has also been tested against earlier releases as well as the development version (#757)

0.30.0

Release 0.30.0 of the R package builds by default against TileDB Embedded 2.26.0, and has also been tested against earlier releases as well as the development version.

tiledb 0.30.0

• This release of the R package builds against TileDB 2.26.0, and has also been tested against earlier releases as well as the development version (#745, #749, #750, #754, #755)

Improvements

• Error messages displayed when a mismatched external pointer is detected now show both expected and encountered types (#740)

• NDRectangle objects can now instantiate from more domain data types (#741, #742)

• NDRectangle objects can now return their number of dimensions and dimension data types (#743)

• FragmentInfo objects are dump via the << stringstream operator instead of a now-deprecated dump() method (#753)

Documentation

• The documentation website now uses favicon symbols for all pages rendered (#739)

Build and Test Systems

• The nighly valgrind matrix now includes release 2.26.0 (#744)

• The continuous integration script has been updated reflecting external changes (#746)

Removals

• Boolean arguments as.data.frame, as.matrix and as.array to the tiledb_array() accessor, deprecated in release 0.20.0 in July 2023 in favor of the more general return_as="..." form, have been removed. (#751)

Deprecation

• As BioConductor package \pkg{TileDBArray} still relies on as.data.frame it was temporarily re-admitted as an argument. It is expected to be removed following the upcoming 3.20 release of BioConducto.r (#752)

0.29.0

Release 0.29.0 of the R package builds by default against TileDB Embedded 2.25.0, and has also been tested against earlier releases as well as the development version.

tiledb 0.29.0

• This release of the R package builds against TileDB 2.25.0, and has also been tested against earlier releases as well as the development version (#728, #736)

Improvements

• Three deprecated calls to dump() methods for TileDB Embedded objects now use the preferred streaming alternatives (#727)

• Two already deprecated functions that are removed in TileDB 2.26.0 are no longer used (#732)

• The vendored nanoarrow has been updated to its release 0.5.0 (#733)

• Fragments can now be removed by supplying a vector of fragment URIs (#734)

• NDRectangle and CurrentDomain objects are supported (with 2.25.0 or newer) and can be used with ArraySchema and ArraySchemeEvolution domain of (#735, #737)

Build and Test Systems

• The nighly valgrind matrix now includes release 2.25.0 (#729)

0.28.2

Release 0.28.2 of the R package builds against TileDB Embedded 2.24.2, and has been tested against earlier releases as well as the development version.

tiledb 0.28.2

• This release of the R package builds against TileDB 2.24.2, and has also been tested against earlier releases as well as the development version (#725)