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@artic-network

ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

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  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 170 163

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    Python 131 71

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 82 34

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 50 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 30 42

  6. primalscheme3 primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    HTML 22 9

Repositories

Showing 10 of 52 repositories
  • rampart-app Public
    artic-network/rampart-app’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Mar 31, 2026
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC fieldbioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 131 MIT 90 8 2 Updated Mar 31, 2026
  • raccoon Public
    artic-network/raccoon’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Mar 30, 2026
  • raccoon-nf Public

    A nextflow implementation of https://github.com/aineniamh/raccoon

    artic-network/raccoon-nf’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Mar 30, 2026
  • artic-doc Public
    artic-network/artic-doc’s past year of commit activity
    HTML 0 5 1 0 Updated Mar 30, 2026
  • peartree Public
    artic-network/peartree’s past year of commit activity
    JavaScript 20 MIT 1 5 0 Updated Mar 30, 2026
  • amplicon-nf Public

    Amplicon genome assembly for ARTIC style primer schemes using Nextflow.

    artic-network/amplicon-nf’s past year of commit activity
    Nextflow 11 MIT 5 5 3 Updated Mar 28, 2026
  • glacier-catalogue Public

    A catalogue of workflow repos available for Glacier application

    artic-network/glacier-catalogue’s past year of commit activity
    0 0 0 0 Updated Mar 23, 2026
  • scylla Public

    single sample processing

    artic-network/scylla’s past year of commit activity
    Python 10 GPL-3.0 7 6 3 Updated Mar 19, 2026
  • sealion Public

    Sequenece alignment viewer

    artic-network/sealion’s past year of commit activity
    JavaScript 1 0 0 0 Updated Mar 12, 2026
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