A lightweight Snakemake pipeline for mapping sequencing reads to a reference genome and annotating them with genomic features.
The pipeline performs two main steps:
- Matching reads to a reference genome
- Annotating matches with gene, TSS, CpG, and repeat element data
It is fully configurable via a single config.yaml file.
See the full documentation for:
- Configuration details
- Workflow and process overview
- Input/output descriptions
- Example datasets
See LICENSE for details.
Abhinav Mishra
Email: [email protected]
Developed during a block course student project in the module Introduction to Focus Areas Master’s in Bioinformatics program at Freie Universität Berlin.