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Bidirectional mapping of functions#125

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thatmariia merged 34 commits intodevfrom
feat/functions
Feb 13, 2026
Merged

Bidirectional mapping of functions#125
thatmariia merged 34 commits intodevfrom
feat/functions

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@thatmariia thatmariia commented Feb 13, 2026 •
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Summary

  • Made a bidirectional mapping of functions: bt function to readme and back. In bt->gh: if readme doesn't have info about functions, we suggest adding it in an issue. if readme already has function info, no issue is created and the functions update is included in the PR.
  • Made a new policy for using gh on top of bt (not just replacing). Used it for the functions, and rewrote lang gh->bt mapping with it.
  • Small bug fixes

Type

  • feat
  • fix
  • docs
  • chore
  • refactor
  • tests
  • hotfix
  • exp

Checklist

  • Rebased on latest dev
  • Passes all pre-commit hooks (poetry run fmt and poetry run lint)
  • Docs updated if needed
  • Tests added/updated if needed
  • Linked to an issue if applicable: Closes B->G: bio.tools function mappings #22

@thatmariia
feat: prep map function bt->gh
48a3545
@thatmariia
feat: implement main function issue logic
7798749
@thatmariia
fix: issue body is a proper string now
ed8bdca
@thatmariia
doc: docstrings and logging for function map
c251dd8
@thatmariia
feat: check existing function in readme with regex
a0684db
@thatmariia
feat: if func in readme, propose it in pr instead of issue
f713a6a
@thatmariia
fix: return unchanged readme if no func update is needed
fba6948
@thatmariia
feat: provide issues as raw and not rendered md
b1a2cdc
@thatmariia
fix: small stylistic fixes and naming bugs
29abb92
@thatmariia
doc: clarify that map func for readme is used in readme
547a14e
@thatmariia
chore: make names and matching safer and more strict
0c4c956
@thatmariia
chore: make names and matching safer and more strict
0b7f78b
@thatmariia
feat: setup for mapping funcs gh->bt
7575803
@thatmariia
feat: create a policy for adding gh values on top of bt values
ce0387e
@thatmariia
chore: expose the new policy func
1189cd3
@thatmariia
feat: use policy in func map
df69484
@thatmariia
chore: move func pattern finding in shared
cd7667c
@thatmariia
feat: extracting functions from readme yamls
8ba0e80
@thatmariia
fix: function name
83c9abc
@thatmariia
fix: hashing functions when extracting
65eb684
@thatmariia
fix: use hash vals for policy
7493113
@thatmariia
doc: add docstrings
6df847c
@thatmariia
fix: bt id type in mapping id
d8353a1
@thatmariia
feat: add langs instead of replacing when mapping gh->bt
6bb55cc
@thatmariia thatmariia linked an issue Feb 13, 2026 that may be closed by this pull request
B->G: bio.tools function mappings #22
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@bio-tools bio-tools deleted a comment from github-actions Bot Feb 13, 2026
@bio-tools bio-tools deleted a comment from github-actions Bot Feb 13, 2026
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github-actions Bot commented Feb 13, 2026

Docs preview ready: https://bio-tools.github.io/biohackathon2025/

@thatmariia thatmariia merged commit 9c23cc6 into dev Feb 13, 2026
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@thatmariia thatmariia deleted the feat/functions branch February 13, 2026 02:08
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thatmariia commented Feb 13, 2026

@veitveit you can check it out now

This was referenced Feb 13, 2026
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B->G: bio.tools function mappings

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