October gene table update: v7

[sbabyanusha]

No description provided.

[rmadupuri]

Thanks @sbabyanusha! This looks good. A couple of questions and improvements we can make

1. Need to consistently maintain the download date. The archive says Oct_07_2025 and Oct_31_2025 in the filenames.
2. Extra column in gene_info file after ensembl_id
3. Remove EGFRVIII with entrez_id -3 record from gene_info.
4. For miRNA records, add type as miRNA in gene_info.txt
5. Remove Mitochondrial genes.
6. Some records have the Chromosome as '-' or '13cen...'. Can they be backfilled from NCBI?
7. Add LINC01394 -> FOXF2-AS1 to outdated_hugo_symbols.txt
8. for case 2: Genes where only Entrez ID got updated, what were the previous entrez ids? Where they added to outdated_entrez_ids list?
9. For genes added to entrez-id-supp.txt, they are already present in the hgnc_complete_set.txt. Missing entrez ids can be backfilled there instead of adding them to supp file?
10. There are ambiguous symbols

Entrez	symbol	freq
3794	ARP11	2
3795	ARP2	2
3796	ARP3	2
13884	COP1	2
15845	CYP1	2
47904	MAF1P1	2
90703	TRY3	2