DAOS-18296 common: update PMDK to version 2.1.3

ci/provisioning/post_provision_config_common_functions.sh

@@ -323,7 +323,7 @@ post_provision_config_nodes() {
         rm -f "$REPOS_DIR"/*_job_daos-stack_job_*_job_*.repo
         time dnf -y erase fio fuse ior-hpc mpich-autoload          \
                      argobots cart daos daos-client daos-spdk dpdk \
-                     libisa-l libpmemobj mercury mpich   \
+                     libisa-l libpmemobj libpmemobj1 mercury mpich \
                      pmix protobuf-c spdk libfabric libpmem        \
                      munge-libs munge slurm                        \
                      slurm-example-configs slurmctld slurm-slurmmd

docs/admin/hardware.md

@@ -21,7 +21,7 @@ servers.
 DAOS requires a 64-bit processor architecture and is primarily developed
 on Intel x86\_64 architecture. The DAOS software and the libraries it
 depends on (e.g., [ISA-L](https://github.com/intel/isa-l),
-[SPDK](https://spdk.io/), [PMDK](https://github.com/pmem/pmdk/), and
+[SPDK](https://spdk.io/), [PMDK](https://github.com/daos-stack/pmdk/), and
 [DPDK](https://www.dpdk.org/) can take
 advantage of Intel Streaming SIMD (SSE) and Intel Advanced Vector Extensions (AVX).
 

docs/admin/troubleshooting.md

@@ -1003,7 +1003,7 @@ Please refer the [ndctl list](https://docs.pmem.io/ndctl-user-guide/ndctl-man-pa
 
 The pmempool is a management tool for Persistent Memory pool files created by PMDK libraries.
 DAOS uses the PMDK library to manage persistence inside ext4 files.
-[pmempool](https://github.com/pmem/pmdk/blob/stable-2.0/doc/pmempool/pmempool-check.1.md) can check consistency of a given pool file.
+[pmempool](https://github.com/daos-stack/pmdk/blob/stable-2.1/doc/pmempool/pmempool-check.1.md) can check consistency of a given pool file.
 It can be run with -r (repair) option which can fix some of the issues with pool file. DAOS will have more number of such pool file (vos-*), based
 on number of targets mention per daos engine. User may need to check each vos pool file for corruption on faulty pool.
 

docs/overview/terminology.md

@@ -32,7 +32,7 @@
 |[OFI](https://ofiwg.github.io/libfabric/)|Open Fabrics Interfaces|
 |OS|Operating System|
 |PM|Persistent Memory|
-|[PMDK](https://github.com/pmem/pmdk)|Persistent Memory Devevelopment Kit|
+|[PMDK](https://github.com/daos-stack/pmdk)|Persistent Memory Devevelopment Kit|
 |[RAFT](https://raft.github.io/)|Raft is a consensus algorithm used to distribute state transitions among DAOS server nodes.|
 |RAS|Reliability, Availability & Serviceability|
 |RDB|Replicated Database, containing pool metadata and maintained across DAOS servers using the Raft algorithm.|

src/vos/README.md

@@ -58,7 +58,7 @@ Please refer to the <a href="../bio/README.md">Blob I/O</a> (BIO) module for mor
 Special care is taken when developing and modifying the VOS layer because any software bug could corrupt data structures in persistent memory.
 The VOS, therefore, checksums its persistent data structures despite the presence of hardware ECC.
 
-The VOS provides a lightweight I/O stack fully in user space, leveraging the <a href="https://github.com/pmem/pmdk">PMDK</a> open-source libraries developed to support this programming model.
+The VOS provides a lightweight I/O stack fully in user space, leveraging the <a href="https://github.com/daos-stack/pmdk">PMDK</a> open-source libraries developed to support this programming model.
 
 <a id="64"></a>
 
@@ -73,7 +73,7 @@ It is worth noting that such transactions are different from the DAOS transactio
 Persistent memory transactions must guarantee consistency of VOS internal data structures when processing incoming requests, regardless of their epoch number.
 Transactions over persistent memory can be implemented in many different ways, e.g., undo logs, redo logs, a combination of both, or copy-on-write.
 
-<a href="https://github.com/pmem/pmdk">PMDK</a> is an open source collection of libraries for using persistent memory, optimized specifically for NVRAM.
+<a href="https://github.com/daos-stack/pmdk">PMDK</a> is an open source collection of libraries for using persistent memory, optimized specifically for NVRAM.
 Among these is the libpmemobj library, which implements relocatable persistent heaps called persistent memory pools.
 This includes memory allocation, transactions, and general facilities for persistent memory programming.
 The transactions are local to one thread (not multi-threaded) and rely on undo logs.

third_party_programs.txt

@@ -117,9 +117,9 @@ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 	Copyright (c) 2009,2014 Google Inc. All rights reserved.
 
 	pmdk (BSD 3-clause "New" or "Revised" License)
-	https://github.com/pmem/pmdk
-	https://github.com/pmem/pmdk/blob/master/LICENSE
-	Copyright 2014-2020, Intel Corporation
+	https://github.com/daos-stack/pmdk
+	https://github.com/daos-stack/pmdk/blob/master/LICENSE
+	Copyright 2014-2024, Intel Corporation
 
 	Portable Hardware Locality (hwloc) (BSD 3-clause "New" or "Revised" License)
 	https://www.open-mpi.org/projects/hwloc/

utils/build.config

@@ -4,7 +4,7 @@ component=daos
 [commit_versions]
 argobots=v1.2
 fused=v1.0.0
-pmdk=2.1.2
+pmdk=2.1.3
 isal=v2.31.1
 isal_crypto=v2.25.0
 spdk=v24.09

utils/rpms/daos.changelog

@@ -1,4 +1,7 @@
 %changelog
+* Wed Feb 18 2026 Oksana Salyk <oksana.salyk@hpe.com> 2.7.104-2
+- Update PMDK to release 2.1.3
+
 * Tue Feb 10 2026 Dalton Bohning <dalton.bohning@hpe.com> 2.7.104-1
 - Bump version to 2.7.104
 

utils/rpms/daos.sh

@@ -184,7 +184,7 @@ EOF
   EXTRA_OPTS+=("--rpm-attr" "2755,root,daos_server:${bindir}/daos_server")
 
   DEPENDS=( "daos = ${VERSION}-${RELEASE}" "daos-spdk = ${daos_spdk_full}" )
-  DEPENDS+=( "${pmemobj_lib} >= ${pmdk_full}" "${argobots_lib} >= ${argobots_full}" )
+  DEPENDS+=( "${pmemobj_lib} = ${pmdk_full}" "${argobots_lib} >= ${argobots_full}" )
   DEPENDS+=( "${isal_crypto_lib} >= ${isal_crypto_version}" "numactl" "pciutils" )
   build_package "daos-server"
 

utils/rpms/daos.spec

@@ -24,7 +24,7 @@
 
 Name:          daos
 Version:       2.7.104
-Release:       1%{?relval}%{?dist}
+Release:       2%{?relval}%{?dist}
 Summary:       DAOS Storage Engine
 
 License:       BSD-2-Clause-Patent
@@ -61,7 +61,7 @@ BuildRequires: libjson-c-devel
 BuildRequires: boost-devel
 %endif
 %if %{with server}
-BuildRequires: libpmemobj-devel >= 2.1.0
+BuildRequires: libpmemobj-devel >= 2.1.3-0
 %endif
 BuildRequires: fused-devel
 %if (0%{?suse_version} >= 1500)
@@ -164,10 +164,10 @@ Requires: ndctl
 # needed to set PMem configuration goals in BIOS through control-plane
 %if (0%{?suse_version} >= 1500)
 Requires: ipmctl >= 03.00.00.0423
-Requires: libpmemobj1 >= 2.1.0-1.suse1500
+Requires: libpmemobj1 >= 2.1.3-0
 %else
 Requires: ipmctl >= 03.00.00.0468
-Requires: libpmemobj >= 2.1.0-1%{?dist}
+Requires: libpmemobj >= 2.1.3-0
 %endif
 Requires: mercury >= %{mercury_version}
 Requires(post): /sbin/ldconfig

utils/rpms/package_info.sh

@@ -50,8 +50,8 @@ export mercury_full="${mercury_version}-${mercury_release}"
 export argobots_version="1.2"
 export argobots_release="4${distro_name}"
 export argobots_full="${argobots_version}-${argobots_release}"
-export pmdk_version="2.1.2"
-export pmdk_release="1${distro_name}"
+export pmdk_version="2.1.3"
+export pmdk_release="0${distro_name}"
 export pmdk_full="${pmdk_version}-${pmdk_release}"
 export isal_version="2.31.1"
 export isal_release="8${distro_name}"
@@ -104,9 +104,9 @@ set_lib_name mercury_libfabric lib mercury-libfabric mercury-libfabric mercury-l
 export mercury_libfabric_lib
 
 set_lib_name pmemobj lib libpmemobj libpmemobj1 libpmemobj1
-set_lib_name pmemobj dev libpmemobj libpmemobj1 libpmemobj1
+set_lib_name pmemobj dev libpmemobj libpmemobj libpmemobj
 set_lib_name pmem lib libpmem libpmem1 libpmem1
-set_lib_name pmem dev libpmem libpmem libpmem1
+set_lib_name pmem dev libpmem libpmem libpmem
 set_lib_name pmempool lib libpmempool libpmempool1 libpmempool1
 export pmem_lib
 export pmem_dev

utils/rpms/pmdk.changelog

@@ -1,6 +1,16 @@
 %changelog
+* Mon Jan 19 2026  Oksana Salyk <oksana.salyk@intel.com> - 2.1.3-0
+- Expand the sds.at_create CTL to disable unnecessary bad-block checking when running without PMem, preventing the stack overflow (DAOS-18296).
+- Fix an issue in the PMEMOBJ allocator with a potential to corrupt the allocator's metadata (DAOS-18195).
+
 * Wed Nov 05 2025  Tomasz Gromadzki <tomasz.gromadzki@intel.com> - 2.1.2-1
-- Update to release 2.1.2
+- Expand the sds.at_create CTL to also cover pmemobj_open() (DAOS-17449)
+  - Previously, this CTL affected only pmemobj_create().
+  - Now, it affects both pmemobj_create() and pmemobj_open().
+  - pmemobj_open() won't be able to open a pool with SDS enabled if the feature is currently
+  force-disabled.
+  - Conversely, pmemobj_open() does not issue a warning when attempting to open a pool with SDS disabled
+  while the feature is force-disabled.
 
 * Fri Oct 31 2025  Tomasz Gromadzki <tomasz.gromadzki@intel.com> - 2.1.0-7
 - Restore the RPM changelog, which has not been available since version 2.1.0-4.
@@ -21,6 +31,7 @@
 
 * Mon Aug 11 2025  Jeff Olivier <jeffolivier@google.com> - 2.1.0-4
 - Switch to fpm build for RPMs
+- New location of the PMDK repository (https://github.com/daos-stack/pmdk)
 
 * Wed Nov 06 2024  Tomasz Gromadzki <tomasz.gromadzki@intel.com> - 2.1.0-3
 - Apply patches to silence annoying error messages on:

utils/rpms/pmdk.sh

@@ -1,5 +1,6 @@
 #!/bin/bash
 # (C) Copyright 2025 Google LLC
+# Copyright 2026 Hewlett Packard Enterprise Development LP
 set -eEuo pipefail
 root="$(realpath "$(dirname "${BASH_SOURCE[0]}")")"
 . "${root}/fpm_common.sh"
@@ -15,7 +16,7 @@ LICENSE="BSD-3-Clause"
 ARCH=${isa}
 DESCRIPTION="The Persistent Memory Development Kit is a collection of libraries for
 using memory-mapped persistence, optimized specifically for persistent memory."
-URL="https://github.com/pmem/pmdk"
+URL="https://github.com/daos-stack/pmdk"
 RPM_CHANGELOG="pmdk.changelog"
 
 files=()