CDCWonder_NNDSS_InfectiousAnnual Measles data refresh PR to bring configs

statvar_imports/us_cdc/nndss_annual_tables/README.md

@@ -0,0 +1,39 @@
+# CDCWonder NNDSS InfectiousAnnual Import
+
+## About the Dataset
+Notifiable Infectious Diseases Data: Annual tables from CDC WONDER which has the incident counts of different infectious diseases per year and are aggregated based on demographic factors. The statistics are reported by the 50 states, New York City, the District of Columbia, and the U.S. territories
+
+### Download URL
+
+Source URL {https://wonder.cdc.gov/nndss/nndss_annual_tables_menu.asp}.
+
+
+To download the latest versions of ALL datasets available, run the following command. Files will be downloaded and extracted to a nndss_Annual_data folder.
+
+### License
+
+This dataset is available for public use, license is available at https://www.cdc.gov/other/agencymaterials.html
+
+
+### Downloading and Processing Data
+
+
+   To download the data follow the below steps
+
+```
+	1.  Select the radio button for the category.
+   2.  Select all locations, all years, and all diseases.
+   3.  Save your selections.
+   4.  The corresponding table will become visible.
+   5.  To download the data, click on "Export."
+```
+
+   To execute the data run the below command, keep chaning the config
+
+```bash
+   python3 ../../../tools/statvar_importer/stat_var_processor.py --input_data='input_files/region_state/NNDSS_Annual_Summary_Data_2023.csv' --pv_map=regional_state_pvmap.csv --config_file=common_metadata.csv --output_path=output/nndss_regional_state --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf |& tee check.log
+``` 
+
+```bash
+   python3 ../../../tools/statvar_importer/stat_var_processor.py --input_data='input_files/{age,race etc}/NNDSS_Annual_Summary_Data_2023.csv' --pv_map=measles_pvmap.csv --config_file=common_metadata.csv --output_path=output/nndss_measles_{age,raceetc} --existing_statvar_mcf=gs://unresolved_mcf/scripts/statvar/stat_vars.mcf |& tee check.log
+```

statvar_imports/us_cdc/nndss_annual_tables/common_metadata.csv

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+parameter,value
+header_rows,1
+mapped_columns,6
+output_columns,"observationDate,observationAbout,variableMeasured,value,measurementMethod,observationPeriod"

statvar_imports/us_cdc/nndss_annual_tables/measles_pvmap.csv

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+prop,key,val,,,,
+Year,observationDate,{Number},populationType,MedicalConditionIncident,observationAbout,country/USA
+Sex:Female,gender,Female,,,,
+Sex:Male,gender,Male,,,,
+Sex:Unknown,gender,CDC_GenderUnknownOrNotStated,,,,
+Age:<1  year,age,YearsUpto1,,,,
+Age:1-4 years,age,Years1To4,,,,
+Age:5-14 years,age,Years5To14,,,,
+Age:15-24 years,age,Years15To24,,,,
+Age:25-39 years,age,Years25To39,,,,
+Age:40-64 years,age,Years40To64,,,,
+Age:65+ years,age,Years65Onwards,,,,
+Age:Unknown,age,USC_AgeNotStated,,,,
+Race:American Indian or Alaska Native,race,AmericanIndianAndAlaskaNativeAlone,,,,
+Race:Asian or Pacific Islander,race,AsianOrPacificIslander,,,,
+Race:Black or African American,race,BlackOrAfricanAmericanAlone,,,,
+Race:White,race,WhiteAlone,,,,
+Race:Other or Multi-Race,race,CDC_OtherRace,,,,
+Race:Unknown,race,CDC_RaceUnknownOrNotStated,,,,
+Race:Suppressed,#ignore,Race,,,,
+,,,,,,
+Ethnicity:Hispanic,ethnicity,HispanicOrLatino,,,,
+Ethnicity:Non-Hispanic,ethnicity,NotHispanicOrLatino,,,,
+Ethnicity:Unknown,ethnicity,CDC_EthnicityUnknownOrNotStated,,,,
+Ethnicity:Suppressed,#ignore,Ignore,,,,
+Regions:United States,residentStatus,USResident,,,,
+Regions:New England,#ignore,Ignore,,,,
+Regions:Middle Atlantic,#ignore,Ignore,,,,
+Regions:East North Central,#ignore,Ignore,,,,
+Regions:West North Central,#ignore,Ignore,,,,
+Regions:South Atlantic,#ignore,Ignore,,,,
+Regions:East South Central,#ignore,Ignore,,,,
+Regions:West South Central,#ignore,Ignore,,,,
+Regions:Mountain,#ignore,Ignore,,,,
+Regions:Pacific,#ignore,Ignore,,,,
+Regions:Territories,#ignore,Ignore,,,,
+Regions:Non-U.S. Residents,residentStatus,NonUSResident,,,,
+,,,,,,
+Case Count,value,{Number},measurementMethod,CDC_NNDSS_Diseases_AnnualTables,observationPeriod,P1Y
+,,,,,,
+10140,medicalCondition,Measles,,,,
+10500,medicalCondition,Measles,medicalStatus,IndigenousCase,,
+10510,medicalCondition,Measles,medicalStatus,ImportedCase,,

statvar_imports/us_cdc/nndss_annual_tables/regional_state_pvmap.csv

@@ -0,0 +1,141 @@
+prop,key,val,,,,
+Year,observationDate,{Number},populationType,MedicalConditionIncident
+Case Count,value,{Number},measurementMethod,CDC_NNDSS_Diseases_AnnualTables,observationPeriod,P1Y
+10140,medicalCondition,Measles,,,,
+10500,medicalCondition,Measles,medicalStatus,IndigenousCase,,
+10510,medicalCondition,Measles,medicalStatus,ImportedCase,,
+
+
+"Ala.",observationAbout,"geoId/01",
+"Alabama",observationAbout,"geoId/01",
+"Alaska",observationAbout,"geoId/02",
+"Amer. Samoa",observationAbout,"geoId/60",
+"American Samoa",observationAbout,"geoId/60",
+"Ariz.",observationAbout,"geoId/04",
+"Arizona",observationAbout,"geoId/04",
+"Ark.",observationAbout,"geoId/05",
+"Arkansas",observationAbout,"geoId/05",
+"C.N.M.I.",observationAbout,"geoId/69",
+"Calif.",observationAbout,"geoId/06",
+"California",observationAbout,"geoId/06",
+"Colo.",observationAbout,"geoId/08",
+"Colorado",observationAbout,"geoId/08",
+"Commonwealth of Northern Mariana Islands",observationAbout,"geoId/69",
+"Commonwealth of the Northern Mariana Islands",observationAbout,"geoId/69",
+"Conn.",observationAbout,"geoId/09",
+"Connecticut",observationAbout,"geoId/09",
+"D.C.",observationAbout,"geoId/11",
+"Del.",observationAbout,"geoId/10",
+"Delaware",observationAbout,"geoId/10",
+"District of Columbia",observationAbout,"geoId/11",
+"E.N. CENTRAL",observationAbout,"usc/EastNorthCentralDivision",
+"E.S. CENTRAL",observationAbout,"usc/EastSouthCentralDivision",
+"East North Central",observationAbout,"usc/EastNorthCentralDivision",
+"East South Central",observationAbout,"usc/EastSouthCentralDivision",
+"Fla.",observationAbout,"geoId/12",
+"Florida",observationAbout,"geoId/12",
+"Ga.",observationAbout,"geoId/13",
+"Georgia",observationAbout,"geoId/13",
+"Guam",observationAbout,"geoId/66",
+"Hawaii",observationAbout,"geoId/15",
+"Idaho",observationAbout,"geoId/16",
+"Ill.",observationAbout,"geoId/17",
+"Illinois",observationAbout,"geoId/17",
+"Ind.",observationAbout,"geoId/18",
+"Indiana",observationAbout,"geoId/18",
+"Iowa",observationAbout,"geoId/19",
+"Kans.",observationAbout,"geoId/20",
+"Kansas",observationAbout,"geoId/20",
+"Kentucky",observationAbout,"geoId/21",
+"Ky.",observationAbout,"geoId/21",
+"La.",observationAbout,"geoId/22",
+"Louisiana",observationAbout,"geoId/22",
+"MID. ATLANTIC",observationAbout,"usc/MiddleAtlanticDivision",
+"MOUNTAIN",observationAbout,"usc/MountainDivision",
+"Maine",observationAbout,"geoId/23",
+"Maryland",observationAbout,"geoId/24",
+"Mass.",observationAbout,"geoId/25",
+"Massachusetts",observationAbout,"geoId/25",
+"Md.",observationAbout,"geoId/24",
+"Mich.",observationAbout,"geoId/26",
+"Michigan",observationAbout,"geoId/26",
+"Middle Atlantic",observationAbout,"usc/MiddleAtlanticDivision",
+"Minn.",observationAbout,"geoId/27",
+"Minnesota",observationAbout,"geoId/27",
+"Miss.",observationAbout,"geoId/28",
+"Mississippi",observationAbout,"geoId/28",
+"Missouri",observationAbout,"geoId/29",
+"Mo.",observationAbout,"geoId/29",
+"Mont.",observationAbout,"geoId/30",
+"Montana",observationAbout,"geoId/30",
+"Mountain",observationAbout,"usc/MountainDivision",
+"N. Dak.",observationAbout,"geoId/38",
+"N. Mex.",observationAbout,"geoId/35",
+"N.C.",observationAbout,"geoId/37",
+"N.H.",observationAbout,"geoId/33",
+"N.J.",observationAbout,"geoId/34",
+"NEW ENGLAND",observationAbout,"usc/NewEnglandDivision",
+"Nebr.",observationAbout,"geoId/31",
+"Nebraska",observationAbout,"geoId/31",
+"Nev.",observationAbout,"geoId/32",
+"Nevada",observationAbout,"geoId/32",
+"New England",observationAbout,"usc/NewEnglandDivision",
+"New Hampshire",observationAbout,"geoId/33",
+"New Jersey",observationAbout,"geoId/34",
+"New Mexico",observationAbout,"geoId/35",
+"New York",observationAbout,"geoId/36",
+"Non-U.S. Residents",#ignore,"Ignore",
+"North Carolina",observationAbout,"geoId/37",
+"North Dakota",observationAbout,"geoId/38",
+"Ohio",observationAbout,"geoId/39",
+"Okla.",observationAbout,"geoId/40",
+"Oklahoma",observationAbout,"geoId/40",
+"Oreg.",observationAbout,"geoId/41",
+"Oregon",observationAbout,"geoId/41",
+"P.R.",observationAbout,"geoId/72",
+"PACIFIC",observationAbout,"usc/PacificDivision",
+"Pa.",observationAbout,"geoId/42",
+"Pacific",observationAbout,"usc/PacificDivision",
+"Pennsylvania",observationAbout,"geoId/42",
+"Puerto Rico",observationAbout,"geoId/72",
+"R.I.",observationAbout,"geoId/44",
+"Republic of Palau",observationAbout,"country/PLW",
+"Republic of the Marshall Islands",observationAbout,"country/MHL",
+"Rhode Island",observationAbout,"geoId/44",
+"S. ATLANTIC",observationAbout,"usc/SouthAtlanticDivision",
+"S. Dak.",observationAbout,"geoId/46",
+"S.C.",observationAbout,"geoId/45",
+"South Atlantic",observationAbout,"usc/SouthAtlanticDivision",
+"South Carolina",observationAbout,"geoId/45",
+"South Dakota",observationAbout,"geoId/46",
+"Tenn.",observationAbout,"geoId/47",
+"Tennessee",observationAbout,"geoId/47",
+"Tex.",observationAbout,"geoId/48",
+"Texas",observationAbout,"geoId/48",
+"U.S. Residents",#ignore,Ignore,
+"U.S. Residents, excluding U.S. Territories",#ignore,Ignore,,
+"U.S. Territories",#ignore,Ignore,
+"U.S. Virgin Islands",observationAbout,"geoId/78",,
+"US Virgin Islands",observationAbout,"geoId/78",
+"United States",observationAbout,"country/USA",
+"Utah",observationAbout,"geoId/49",
+"V.I.",observationAbout,"geoId/78",
+"Va.",observationAbout,"geoId/51",
+"Vermont",observationAbout,"geoId/50",
+"Virginia",observationAbout,"geoId/51",
+"Vt.",observationAbout,"geoId/50",
+"W. Va.",observationAbout,"geoId/54",
+"W.N. CENTRAL",observationAbout,"usc/WestNorthCentralDivision",
+"W.S. CENTRAL",observationAbout,"usc/WestSouthCentralDivision",
+"Wash.",observationAbout,"geoId/53",
+"Washington",observationAbout,"geoId/53",
+"Washington DC",observationAbout,"geoId/11001",
+"West North Central",observationAbout,"usc/WestNorthCentralDivision",
+"West South Central",observationAbout,"usc/WestSouthCentralDivision",
+"West Virginia",observationAbout,"geoId/54",
+"Wis.",observationAbout,"geoId/55",
+"Wisconsin",observationAbout,"geoId/55",
+"Wyo.",observationAbout,"geoId/56",
+"Wyoming",observationAbout,"geoId/56"
+"New York (excluding New York City)",#ignore,Ignore
+"New York City",#ignore,Ignore

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_age_sample_input.csv

@@ -0,0 +1,17 @@
+"Notes","Disease","Disease Code","Year","Year Code","Age","Age Code",Case Count
+,"Measles, Total","10140","2023","2023","<1  year         ","1",8
+,"Measles, Total","10140","2023","2023","1-4 years","2",20
+,"Measles, Total","10140","2023","2023","5-14 years","3",12
+,"Measles, Total","10140","2023","2023","15-24 years","4",17
+,"Measles, Total","10140","2023","2023","25-39 years","5",5
+,"Measles, Total","10140","2023","2023","40-64 years","6",2
+,"Measles, Total","10140","2023","2023","65+ years","7",0
+,"Measles, Total","10140","2023","2023","Unknown","99",0
+,"Measles, Indigenous","10500","2023","2023","<1  year         ","1",4
+,"Measles, Indigenous","10500","2023","2023","1-4 years","2",13
+,"Measles, Indigenous","10500","2023","2023","5-14 years","3",9
+,"Measles, Indigenous","10500","2023","2023","15-24 years","4",13
+,"Measles, Indigenous","10500","2023","2023","25-39 years","5",3
+,"Measles, Indigenous","10500","2023","2023","40-64 years","6",0
+,"Measles, Indigenous","10500","2023","2023","65+ years","7",0
+,"Measles, Indigenous","10500","2023","2023","Unknown","99",0

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_ethnicity_sample_input.csv

@@ -0,0 +1,9 @@
+"Notes","Disease","Disease Code","Year","Year Code","Ethnicity","Ethnicity Code",Case Count
+,"Measles, Total","10140","2023","2023","Hispanic","1",3
+,"Measles, Total","10140","2023","2023","Non-Hispanic","non-",50
+,"Measles, Total","10140","2023","2023","Unknown","99",11
+,"Measles, Total","10140","2023","2023","Suppressed","98",0
+,"Measles, Indigenous","10500","2023","2023","Hispanic","1",3
+,"Measles, Indigenous","10500","2023","2023","Non-Hispanic","non-",34
+,"Measles, Indigenous","10500","2023","2023","Unknown","99",5
+,"Measles, Indigenous","10500","2023","2023","Suppressed","98",0

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_race_sample_input.csv

@@ -0,0 +1,9 @@
+"Notes","Disease","Disease Code","Year","Year Code","Race","Race Code",Case Count
+,"Measles, Indigenous","10500","2023","2023","American Indian or Alaska Native","1",0
+,"Measles, Indigenous","10500","2023","2023","Asian or Pacific Islander","2",3
+,"Measles, Indigenous","10500","2023","2023","Black or African American","3",6
+,"Measles, Indigenous","10500","2023","2023","White","4",16
+,"Measles, Indigenous","10500","2023","2023","Other or Multi-Race","5",10
+,"Measles, Indigenous","10500","2023","2023","Unknown","99",7
+,"Measles, Indigenous","10500","2023","2023","Suppressed","98",0
+"Total","Measles, Indigenous","10500","2023","2023",,,42

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_region_sample_input.csv

@@ -0,0 +1,14 @@
+"Notes","Disease","Disease Code","Year","Year Code","Regions","Regions Code",Case Count
+,"Measles, Indigenous","10500","2023","2023","United States","U.S.",42
+,"Measles, Indigenous","10500","2023","2023","New England","REGION1",0
+,"Measles, Indigenous","10500","2023","2023","Middle Atlantic","REGION2",6
+,"Measles, Indigenous","10500","2023","2023","East North Central","REGION3",9
+,"Measles, Indigenous","10500","2023","2023","West North Central","REGION4",1
+,"Measles, Indigenous","10500","2023","2023","South Atlantic","REGION5",0
+,"Measles, Indigenous","10500","2023","2023","East South Central","REGION6",1
+,"Measles, Indigenous","10500","2023","2023","West South Central","REGION7",2
+,"Measles, Indigenous","10500","2023","2023","Mountain","REGION8",9
+,"Measles, Indigenous","10500","2023","2023","Pacific","REGION9",14
+,"Measles, Indigenous","10500","2023","2023","Territories","REGION10",0
+,"Measles, Indigenous","10500","2023","2023","Non-U.S. Residents","REGION11",0
+

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_sample_output.csv

@@ -0,0 +1,38 @@
+observationDate,observationAbout,variableMeasured,value,measurementMethod,observationPeriod
+2023,country/USA,dcid:Count_MedicalConditionIncident_1_LessYears_ConditionMeasles,8,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_1To4Years_ConditionMeasles,20,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_5To14Years_ConditionMeasles,12,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_15To24Years_ConditionMeasles,17,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_25To39Years_ConditionMeasles,5,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_40To64Years_ConditionMeasles,2,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_65_MoreYears_ConditionMeasles,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_AgeNotStated_ConditionMeasles,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_1_LessYears_ConditionMeasles_IndigenousCase,4,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_1To4Years_ConditionMeasles_IndigenousCase,13,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_5To14Years_ConditionMeasles_IndigenousCase,9,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_15To24Years_ConditionMeasles_IndigenousCase,13,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_25To39Years_ConditionMeasles_IndigenousCase,3,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_40To64Years_ConditionMeasles_IndigenousCase,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_65_MoreYears_ConditionMeasles_IndigenousCase,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_AgeNotStated_ConditionMeasles_IndigenousCase,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_Hispanic_Latino_ConditionMeasles,3,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_NotHispanic_Latino_ConditionMeasles,50,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_EthnicityUnknown_NotStated_ConditionMeasles,11,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_Hispanic_Latino_ConditionMeasles_IndigenousCase,3,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_NotHispanic_Latino_ConditionMeasles_IndigenousCase,34,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_EthnicityUnknown_NotStated_ConditionMeasles_IndigenousCase,5,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_AmericanIndianAndAlaskaNativeAlone,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_Asian_PacificIslander,3,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_Black_AfricanAmericanAlone,6,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_WhiteAlone,16,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_OtherRace,10,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_RaceUnknown_NotStated,7,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase,42,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_USResident,42,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_ConditionMeasles_IndigenousCase_NonUSResident,0,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_Female_ConditionMeasles_IndigenousCase,25,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_Male_ConditionMeasles_IndigenousCase,16,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_GenderUnknown_NotStated_ConditionMeasles_IndigenousCase,1,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_Female_ConditionMeasles_ImportedCase,9,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_Male_ConditionMeasles_ImportedCase,13,CDC_NNDSS_Diseases_AnnualTables,P1Y
+2023,country/USA,dcid:Count_MedicalConditionIncident_GenderUnknown_NotStated_ConditionMeasles_ImportedCase,0,CDC_NNDSS_Diseases_AnnualTables,P1Y

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_sample_output.tmcf

@@ -0,0 +1,8 @@
+Node: E:measles_sample_output->E0
+observationDate: C:measles_sample_output->observationDate
+observationAbout: C:measles_sample_output->observationAbout
+variableMeasured: C:measles_sample_output->variableMeasured
+value: C:measles_sample_output->value
+measurementMethod: C:measles_sample_output->measurementMethod
+observationPeriod: C:measles_sample_output->observationPeriod
+typeOf: dcs:StatVarObservation

statvar_imports/us_cdc/nndss_annual_tables/test_data/measles_sex_sample_input.csv

@@ -0,0 +1,8 @@
+"Notes","Disease","Disease Code","Year","Year Code","Sex","Sex Code",Case Count
+,"Measles, Indigenous","10500","2023","2023","Female","1",25
+,"Measles, Indigenous","10500","2023","2023","Male","2",16
+,"Measles, Indigenous","10500","2023","2023","Unknown","99",1
+"Total","Measles, Indigenous","10500",,,,,42
+,"Measles, Imported","10510","2023","2023","Female","1",9
+,"Measles, Imported","10510","2023","2023","Male","2",13
+,"Measles, Imported","10510","2023","2023","Unknown","99",0