coevo

Functions for running tests of coevolution (cophylogenetic signal) to assess coevolution in symbiotic systems.

Install the package using devtools::install_github()

devtools::install_github('kbeigel/coevo')

library(coevo)

Example and usage

Please see kbeigel/Tseptentrionalis_Specificity_2025 for the usage of this mini-package on a real-world dataset.

Acknowledgements

The underlying functions for this mini-package are built using methods developed by Alix Matthews (@alixmatthews) whose original project code is available at: alixmatthews/cophylogenetic and alixmatthews/parulidae_proctophyllodidae_cophylo/04_CophylogeneticTests/ParaFit_PACo_Clean.R. Katherine Beigel (@kbeigel) developed this mini-package to streamline analysis operations for ParaFit and PACo, improve figure creation (adding bootstraps from original phylos to the cophylo), and put data into table formats for easier writing and downstream manipulation.