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Fix pandas chained indexing to restore NumPy 2.x compatibility #854

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Fix pandas chained indexing to restore NumPy 2.x compatibility #854

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1f99445
fix: replace chained pandas indexing with .loc for NumPy 2.x compatib…
adilraza99 Feb 2, 2026
b7a1228
Merge branch 'master' into fix-pandas-slicing-numpy2
jonbrenas Feb 9, 2026
52326c8
Merge branch 'master' into fix-pandas-slicing-numpy2
jonbrenas Feb 9, 2026
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2 changes: 1 addition & 1 deletion malariagen_data/anopheles.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2369,7 +2369,7 @@ def plot_haplotype_network(

# count color values for each distinct haplotype (same for both string and mapping cases)
ht_color_counts = [
df_haps.iloc[list(s)]["_partition"].value_counts().to_dict()
df_haps.loc[list(s), "_partition"].value_counts().to_dict()
for s in ht_distinct_sets
]

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