Demographic_history

Codes about evolutionary history of wheats

1. Get_VCF

This folder includes counting, merging, filtering and evaluating VCF files.

2. Population Structure

Codes in this folder describe the popultaion structure of wheat and its wild relatives.

3. Speciation

Codes in this folder describe when and where of subspecies formation in wheats.

4. Demography model

Codes in this folder describe the bidirectional gene flow among subspecies in wheats and the genetic legacy of wild progenitors.

5. Migration

Codes in this folder contains dispersal maps of bread wheat in Eurasia, describing the migration routes of bread wheat.

6. Ne

Codes in this folder describe the effective population size of wheat and its wild relatives.

7. Climate

Codes in this folder describe the differences in selection pressure for bread wheat in different environmental regions.

8. Genetic heritage

Codes in this folder describe the haplotypes of important genes have been cloned under selection during bread wheat expansion.