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Replicating QIIME2 parameters in ampliseq

Status: Open.

#934 In nf-core/ampliseq;

· carsharp opened on Dec 8, 2025

Export distance matrix files

enhancementNew feature or requestNew feature or request

Status: Open.

#933 In nf-core/ampliseq;

· michaelsilverstein opened on Dec 3, 2025

Separation of BOLD genus and species in SBDI export

bugSomething isn't workingSomething isn't working

Status: Open.

#923 In nf-core/ampliseq;

· pragermh opened on Oct 29, 2025

Add <code>--sintax_ref_tax_custom</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#915 In nf-core/ampliseq;

· erikrikarddaniel opened on Oct 1, 2025

Add tombRaider

enhancementNew feature or requestNew feature or request

Status: Open.

#886 In nf-core/ampliseq;

· erikrikarddaniel opened on May 15, 2025

add merge input information to dada2 reporting

enhancementNew feature or requestNew feature or request

Status: Open.

#873 In nf-core/ampliseq;

· Lumimar opened on Apr 24, 2025

·  

2.16.0

ARM end to end run

Status: Open.

#850 In nf-core/ampliseq;

· edmundmiller opened on Mar 24, 2025

General Testing Framework

Status: Open.

#844 In nf-core/ampliseq;

· Sofokli5 opened on Mar 24, 2025

Ensure Databases Combatibility with ampliseq Modules

Status: Open.

#843 In nf-core/ampliseq;

· Sofokli5 opened on Mar 24, 2025

Create Test Datasets

Status: Open.

#842 In nf-core/ampliseq;

· Sofokli5 opened on Mar 24, 2025

Add plant reference databases to enable nf-core/ampliseq support for plant samples

enhancementNew feature or requestNew feature or request

Status: Open.

#841 In nf-core/ampliseq;

· Sofokli5 opened on Mar 24, 2025

·  

2.13.0

SRS alternative tool to rarefaction

enhancementNew feature or requestNew feature or request

Status: Open.

#819 In nf-core/ampliseq;

· marwa38 opened on Dec 17, 2024