Skip to content

Clean up whitespaces#509

Merged
Kevin-Brockers merged 1 commit intonf-core:devfrom
Kevin-Brockers:dev
Apr 27, 2026
Merged

Clean up whitespaces#509
Kevin-Brockers merged 1 commit intonf-core:devfrom
Kevin-Brockers:dev

Conversation

@Kevin-Brockers
Copy link
Copy Markdown

@Kevin-Brockers Kevin-Brockers commented Apr 27, 2026 •
edited
Loading

Updates

  • Just removed some whitespace, that were necessary for *_versions to match the Harshil alignment.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/chipseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions
Copy link
Copy Markdown

github-actions Bot commented Apr 27, 2026 •
edited
Loading

nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 127a32a

+| ✅ 267 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   7 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in nextflow.config: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
  • pipeline_todos - TODO string in nextflow.config: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes

❔ Tests ignored:

  • nextflow_config - Config default ignored: params.bamtools_filter_pe_config
  • nextflow_config - Config default ignored: params.bamtools_filter_se_config

✅ Tests passed:

Run details

  • nf-core/tools version 3.5.2
  • Run at 2026-04-27 19:07:22

LouisLeNezet
LouisLeNezet approved these changes Apr 27, 2026
View reviewed changes
Copy link
Copy Markdown

@LouisLeNezet LouisLeNezet left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Fine for me

@Kevin-Brockers Kevin-Brockers merged commit 1d6a6bd into nf-core:dev Apr 27, 2026
21 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@mashehu mashehu mashehu approved these changes

@LouisLeNezet LouisLeNezet LouisLeNezet approved these changes

Assignees

No one assigned

Labels

None yet

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

3 participants

@Kevin-Brockers @mashehu @LouisLeNezet