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Convert all test models to SBML

Status: Open.

#127 In opencobra/Medusa;

· gregmedlock opened on Aug 31, 2025

Update documentation requirements.txt

Status: Open.

#126 In opencobra/Medusa;

· gregmedlock opened on Aug 31, 2025

Update requirements.txt

Status: Open.

#118 In opencobra/Medusa;

· gregmedlock opened on Aug 28, 2025

base_model

Status: Open.

#59 In opencobra/Medusa;

· Basie12 opened on Jul 24, 2020

clarify batch_load_from_files docstrings, variable names, and SBML/json checking

development

Status: Open.

#50 In opencobra/Medusa;

· gregmedlock opened on Jan 6, 2020

Update for compatibility with newer cobrapy versions

development

Status: Open.

#47 In opencobra/Medusa;

· gregmedlock opened on Jan 2, 2020

Package-wide linting

cleaning

Status: Open.

#46 In opencobra/Medusa;

· gregmedlock opened on Jan 2, 2020

Parametrize tests

testing

Status: Open.

#45 In opencobra/Medusa;

· gregmedlock opened on Jan 2, 2020

Order of min/max columns in cobrapy has changed

Status: Open.

#35 In opencobra/Medusa;

· gregmedlock opened on Aug 22, 2019

Add utility functions for extracting useful information about an ensemble

enhancement

Status: Open.

#33 In opencobra/Medusa;

· gregmedlock opened on Mar 5, 2019

Implement multiprocessing for iterative gapfilling

enhancement

Status: Open.

#32 In opencobra/Medusa;

· gregmedlock opened on Feb 15, 2019

Include simpler analyses in examples within documentation

Documentation

Status: Open.

#30 In opencobra/Medusa;

· gregmedlock opened on Jan 31, 2019