Add semi-supervised STACAS (ssSTACAS) as new method component#59
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JGarnica22 wants to merge 13 commits intoopenproblems-bio:mainfrom
Open
Add semi-supervised STACAS (ssSTACAS) as new method component#59JGarnica22 wants to merge 13 commits intoopenproblems-bio:mainfrom
JGarnica22 wants to merge 13 commits intoopenproblems-bio:mainfrom
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@JGarnica22 Can you merge upstream/main into this branch? 🙇 |
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thanks, done! |
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Please see the same problem at #58 (comment) |
mumichae
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Aug 29, 2025
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mumichae
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Looks good, just some minor comments
Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>
Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>
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Hi, thanks for your support, I merged the changes. |
8 tasks
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Hi, thanks again. I merged the changes:
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Hi, just checking in on this PR. Let me know if there’s anything I should update or clarify to help move it forward. Thanks! |
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Describe your changes
Add
methods/ss_stacasnew metric component.Add semi-supervised version of STACAS tool for integration of single-cell transcriptomics data.
This functionality leverages partial or imperfect knowledge of cell identity to improve integration quality by preserving biological variation while correcting for batch effects.
More information at:
Checklist before requesting a review
I have performed a self-review of my code
Check the correct box. Does this PR contain:
Proposed changes are described in the CHANGELOG.md
CI Tests succeed and look good!