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Replace conda environment.yml files and micromamba-based CI with pixi configuration embedded in pyproject.toml. This simplifies environment management by using a single source of truth for all dependencies. - Add [tool.pixi.*] sections to pyproject.toml with all environments - Rewrite CI workflow to use prefix-dev/setup-pixi - Update .readthedocs.yml to use pixi via asdf - Remove old conda files (environment.yml, testenv-*.yml, update_envs.py) - Update check_mypy_versions.py to read from pyproject.toml - Update developer docs to reference pixi commands - Bump check-added-large-files maxkb to accommodate pixi.lock Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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- Move optimizer backends and viz libs from test feature to base deps - Create separate typecheck env with mypy + type stubs - Slim down docs feature to only sphinx tooling + doc-specific deps - Slim down default env to just base + test (no typecheck/docs) - Rename docs task to build-docs - Remove pixi install from RTD config (pixi run handles it) - Remove pre-commit/pdbp from pixi deps (install globally) - Update contributor guide: explain global pre-commit install - Fix two pre-existing mypy errors in history.py and slice_plot_3d.py Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Move optimizer backends and viz libs from test feature to base deps - Create separate typecheck env with mypy + type stubs - Slim down docs feature to only sphinx tooling + doc-specific deps - Slim down default env to just base + test (no typecheck/docs) - Rename docs task to build-docs - Remove pixi install from RTD config (pixi run handles it) - Remove pre-commit/pdbp from pixi deps (install globally) - Update contributor guide: explain global pre-commit install - Revert unrelated algorithms.py changes from pre-commit hook - Fix two pre-existing mypy errors in history.py and slice_plot_3d.py - Pin pandas<3 for gradient-free-optimizers compatibility - Pin gradient-free-optimizers>=1.6.0 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
JAX 0.3.0 (resolved for py310) references scipy.linalg.tril which was removed in newer scipy. Pin to >=0.4.1 to ensure compatibility. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
RTD's build step conflicts with custom pixi-based builds when a sphinx configuration is declared. Move the build to post_build (matching the dags pattern) and remove the sphinx section so RTD doesn't try to run its own sphinx build. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Codecov Report✅ All modified and coverable lines are covered by tests.
... and 1 file with indirect coverage changes 🚀 New features to boost your workflow:
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- Update requires-python to >=3.12, add 3.14 classifier - Set Python 3.14 as default dev, typecheck, and docs version - Remove py310/py311 pixi features, CI matrix entries, and environments - Add py314 pixi feature and environments across linux, mac/win, nevergrad - Remove test-old-pandas env (pandas <2 incompatible with Python 3.12+) - Remove petsc4py upper bound pin (no 3.14 builds at <=3.23.4) - Update ruff target-version to py312 - Update publish workflow and RTD config Python versions Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Also fix missing return in compat.py and end-of-file in config.py. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Set target to auto (base branch coverage) with 1% threshold to avoid failing on infrastructure PRs that don't change code. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
--cov=./ measured coverage of the entire repo including .tools/ and other non-source files. Scoping to src/optimagic gives accurate results and restores the codecov/project check. Also reverts the codecov target change since the root cause is now fixed. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
--cov=src/optimagic excluded src/estimagic from coverage. Using --cov=src captures both packages while still avoiding .pixi/envs/ contamination. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
janosg
approved these changes
Mar 12, 2026
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Summary
pyproject.tomlmain.yml,.readthedocs.yml) to useprefix-dev/setup-pixiandpixi runenvironment.yml,.tools/envs/testenv-*.yml,.tools/update_envs.py,docs/rtd_environment.yml)check_mypy_versions.pyto reference pixi instead of condaDetails
All environments (default dev, test-linux, test-py, old-pandas/numpy/plotly, nevergrad, docs) are defined in
[tool.pixi.environments]with feature composition. Linux-specific deps (JAX, PETSc) use separate solve-groups to avoid cross-platform conflicts.