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    74 repositories

    • daylily-ephemeral-cluster

      Public
      (current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m…
      awsbioinformaticssnakemake
      awsbioinformaticssnakemakescalableec2nextflowngsslurmbudgetingbioinformatics-pipeline
      HTML
      •
      GNU General Public License v3.0
      •3•23•32•0•Updated May 2, 2026May 2, 2026

    • daylily-omics-analysis

      Public
      (current) Comprehensive WGS omics analysis pipeline ( reads to variants & QC ) : Sequence Platforms ( Illumina, PacBio, ONT, Ultima, Roche )
      snakemakengspacbio
      snakemakengspacbiowgssnvilluminacnvsvqcont
      Python
      •
      GNU General Public License v3.0
      •1•3•2•1•Updated May 2, 2026May 2, 2026

    • daylily-tapdb

      Public
      Python
      •
      MIT License
      •0•0•6•1•Updated May 1, 2026May 1, 2026

    • dewey

      Public
      File management!
      Python
      •
      MIT License
      •0•0•3•0•Updated Apr 29, 2026Apr 29, 2026

    • daylily-ursa

      Public
      Daylily ephemeral cluster automated analysis workset manager.
      Python
      •0•0•2•0•Updated Apr 29, 2026Apr 29, 2026

    • bloom

      Public
      Templated Abstract Polymorphic (and opinionated) LIMS
      PLpgSQL
      •
      Mozilla Public License 2.0
      •1•2•30•0•Updated Apr 29, 2026Apr 29, 2026

    • zebra_day

      Public
      Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
      pythonawsbioinformatics
      pythonawsbioinformaticsbarcodebarcode-generatorsalesforcezplzebra-printerzebradiscovery-service
      Python
      •
      GNU General Public License v3.0
      •3•17•4•0•Updated Apr 29, 2026Apr 29, 2026

    • marvain

      Public
      Python
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • daylily-auth-cognito

      Public
      Share cognito library to generalize sso functionality for fastapi+jinja 2 based web apps.
      Python
      •
      MIT License
      •0•0•3•1•Updated Apr 27, 2026Apr 27, 2026

    • cli-core-yo

      Public
      A pluggable command line cli library for bash and zsh shells
      bashzshcli
      bashzshcliyopluggable
      Python
      •
      MIT License
      •0•0•1•1•Updated Apr 27, 2026Apr 27, 2026

    • well-whaddya-know

      Public
      Simple Mac app to track active time, by active window time, of your work. With simple gui and local data store.
      Swift
      •
      MIT License
      •0•0•1•0•Updated Apr 3, 2026Apr 3, 2026

    • metapub

      Public
      Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
      Python
      •
      Apache License 2.0
      •33•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • homebrew-tap

      Public
      Homebrew tap for Daylily Informatics tools
      Ruby
      •0•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • fedex_tracking_day

      Public
      Python Module Interfacing w/The FedEx Tracking API
      pythonshippingsimple
      pythonshippingsimplepython3federatedfedexfedexapifedex-api
      Python
      •
      MIT License
      •0•4•0•0•Updated Apr 3, 2026Apr 3, 2026

    • daylily-omics-references

      Public
      The code which manages the reference bucket(s) utilized by daylily-omics-analysis and other bioinformatics analyses repos supported to run on daylily-ephemeral-…
      Python
      •
      MIT License
      •0•0•0•2•Updated Apr 3, 2026Apr 3, 2026

    • daylily-carrier-tracking

      Public
      Library that takes shipment carrier tracking numbers and returns standardized info for use in operational systems intetgrating with carriers. Enabled: FedEx, U…
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • snakemake

      Public
      This is the development home of the workflow management system Snakemake. For general information, see
      HTML
      •
      MIT License
      •639•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • metapub_peep

      Public
      Slim fastapi / jinja2 web application to expose metapub command line functionality.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • UltraQC

      Public
      Web application to collect and visualise data across multiple MultiQC runs.
      HTML
      •
      GNU General Public License v3.0
      •28•0•0•0•Updated Dec 25, 2025Dec 25, 2025

    • marvin-ai-buddy

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Dec 15, 2025Dec 15, 2025

    • whaddya-want

      Public
      Ai companion
      Python
      •0•0•0•13•Updated Dec 15, 2025Dec 15, 2025

    • daylily_giab_analyses

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • snakemake-executor-plugin-pcluster-slurm

      Public
      slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.
      pluginawssnakemake
      pluginawssnakemakesbatchslurmsnakemake-pluginpclusteraws-parallel-cluster
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 3, 2025Dec 3, 2025

    • img_stitcher_day

      Public
      Playing around with merging images taken of the outside of a tube.
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 3, 2025Dec 3, 2025

    • rna-seq-star-deseq2

      Public
      RNA-seq workflow using STAR and DESeq2
      Python
      •
      MIT License
      •210•1•0•11•Updated Dec 3, 2025Dec 3, 2025

    • daylily-aws-parallelcluster-ui

      Public
      (current)
      TypeScript
      •
      Apache License 2.0
      •25•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • daylily-sarek

      Public
      Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
      Nextflow
      •
      MIT License
      •528•1•0•0•Updated Oct 15, 2025Oct 15, 2025

    • hap-eval

      Public
      A VCF comparison engine for structual variant benchmarking
      Python
      •
      BSD 2-Clause "Simplified" License
      •4•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • day-rsem-star

      Public
      Star aligner RSEM processing of rnaseq data.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • snakemake-aws

      Public
      This is the development home of the workflow management system Snakemake. For general information, see
      Python
      •
      MIT License
      •639•0•0•0•Updated Sep 26, 2025Sep 26, 2025
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