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    11 repositories

    • bac-mining

      Public
      A Nextflow workflow for bacterial genome annotation with an emphasis on bioactive molecules
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • fermented-food-peptidomics-mining-results

      Public
      Repository for analyzing results from publicly available fermented foods 'omics datasets
      HTML
      •
      MIT License
      •0•2•0•0•Updated Feb 23, 2026Feb 23, 2026

    • peptide-model-curation

      Public
      Repository for documenting metadata and model curation associated with peptide bioactivity classification models
      Python
      •0•1•0•0•Updated Feb 23, 2026Feb 23, 2026

    • peptide-bioactivity-prediction

      Public
      A Nextflow workflow to predict bioactivity and physiochemical characteristics of input peptide sequences
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • metagenome-containment-profiler

      Public
      Workflow for profiling containment of reference genomes in metagenomic samples using sylph
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • spontaneous-oats

      Public
      Analysis repository for exploring microbial communities in spontaneously fermenting oats
      R
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • microcosmfoods.github.io

      Public
      Landing page for Microcosm Foods
      Astro
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 9, 2025Sep 9, 2025

    • fermentedfood_mags_curation

      Public
      Curated publicly available genomic data of fermented foods + microbes
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 20, 2025Aug 20, 2025

    • .github

      Public
      0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • global-food-omics-untargeted-gnps-scan

      Public
      GNPS scan of untargeted metabolomics data for fermented foods from the Global Food 'Omics Project
      HTML
      •
      MIT License
      •0•0•1•0•Updated Jun 27, 2025Jun 27, 2025

    • fermentedfood_metadata_curation

      Public
      Curated metadata for microbial genomes from fermented foods
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025
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