SigProfilerSuite
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SigProfilerExtractor
PublicSigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative muta…SigProfilerClusters
PublicTool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on…SigProfilerTopography
PublicSigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA tran…SigProfilerAssignment
PublicTMB_plotter
Public archiveSigProfilerSimulator
PublicSigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signature…SigProfilerPlotting
PublicSigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. Th…- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the ge…
SigProfilerAssignmentR
Public archiveSigProfilerPlottingR
Public archiveAn R wrapper for running the SigProfilerPlotting frameworkSigProfilerSimulatorR
Public archiveSigProfilerExtractorR
Public archiveAn R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the nu…SigProfilerMatrixGeneratorR
Public archiveR wrapper for utilizing the SigProfilerMatrixGenerator frameworkSigProfilerSingleSample
Public archive
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