Repositories list

• datahub-study-curation-tools

  Public
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.

  HTML

  •

  GNU Affero General Public License v3.0

  •17•20•2•5•Updated Dec 4, 2025Dec 4, 2025

• cbioportal-docker-compose

  Public

  cBioPortal/cbioportal-docker-compose’s past year of commit activity
  Run cBioPortal using Docker Compose

  Shell

  •51•20•3•3•Updated Dec 4, 2025Dec 4, 2025

• cbioportal-frontend

  Public
  React Frontend of cBioPortal 🎉

  reactmobxcancer-genomics

  TypeScript

  •

  GNU Affero General Public License v3.0

  •351•130•0•40•Updated Dec 4, 2025Dec 4, 2025

• cbioportal

  Public

  cBioPortal/cbioportal’s past year of commit activity
  cBioPortal for Cancer Genomics

  visualizationsciencecancer-genomics+ 1precision-medicine

  Java

  •

  GNU Affero General Public License v3.0

  •759•893•301•32•Updated Dec 4, 2025Dec 4, 2025

• oncotree

  Public
  Java

  •

  Creative Commons Attribution 4.0 International

  •29•46•31•14•Updated Dec 3, 2025Dec 3, 2025

• datahub

  Public
  A centralized location for storing curated data from cBioPortal

  HTML

  •131•196•139•16•Updated Dec 1, 2025Dec 1, 2025

• cbioportal-core

  Public

  cBioPortal/cbioportal-core’s past year of commit activity
  Externalized cBioPortal Core

  Java

  •23•3•24•6•Updated Dec 1, 2025Dec 1, 2025

• installation-map

  Public
  cBioPortal Installation Map

  TypeScript

  •4•0•0•0•Updated Nov 23, 2025Nov 23, 2025

• msk-ecosystems-validator

  Public
  Python

  •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

• cbioportal-mcp

  Public
  Python

  •2•0•2•1•Updated Nov 19, 2025Nov 19, 2025

• cbioportal-test

  Public
  Tests for cBioPortal.

  HTML

  •

  MIT License

  •3•0•0•0•Updated Nov 12, 2025Nov 12, 2025

• clickhouse-only-importer-prototype

  Public
  Go

  •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

• cellxgene-dash

  Public
  JavaScript

  •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

• cancerhotspots

  Public
  Cancer Hotspots

  JavaScript

  •

  GNU Affero General Public License v3.0

  •9•6•4•3•Updated Oct 22, 2025Oct 22, 2025

• LibreChat

  Public
  Enhanced ChatGPT Clone: Features Agents, MCP, DeepSeek, Anthropic, AWS, OpenAI, Responses API, Azure, Groq, o1, GPT-5, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message search, Code Interpreter, langchain, DALL-E-3, OpenAPI Actions, Functions, Secure Multi-User Auth, Presets, open-source for self-hosting. Active.

  TypeScript

  •

  MIT License

  •6.4k•0•0•0•Updated Oct 21, 2025Oct 21, 2025

• mcp_experiments

  Public
  cBioPortal MCP Experiments

  MIT License

  •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• session-service

  Public
  Java

  •20•7•11•1•Updated Sep 8, 2025Sep 8, 2025

• h5ad2cbioportaldb

  Public
  Python CLI tool for importing h5ad single-cell files into cBioPortal's ClickHouse database

  Python

  •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• cBioPubChat

  Public
  LLM-powered chatbot for exploring cBioPortal publications.

  Python

  •1•2•0•1•Updated Jun 12, 2025Jun 12, 2025

• cbio-case-summarizer

  Public
  LLM generated summaries for cases in cBioPortal

  Python

  •

  MIT License

  •0•0•0•1•Updated Jun 5, 2025Jun 5, 2025

• .github

  Public
  README for cBioPortal Org Page

  1•0•0•1•Updated Apr 25, 2025Apr 25, 2025

• temp-genie-page

  Public
  HTML

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• GSoC

  Public
  Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

  49•135•28•0•Updated Feb 27, 2025Feb 27, 2025

• cbiohubpy

  Public
  Python package and CLI tool simplifying the analysis of data from cBioPortal

  Python

  •

  MIT License

  •1•1•0•0•Updated Jan 2, 2025Jan 2, 2025

• roadmap

  Public
  cBioPortal Public Roadmap

  0•1•19•0•Updated Dec 30, 2024Dec 30, 2024

• cbioportal-helm

  Public
  Helm charts for cBioPortal Kubernetes Deployment

  1•0•1•0•Updated Nov 26, 2024Nov 26, 2024

• kc-user-importer

  Public
  Keycloak Legacy Light Client and user import scripts

  Python

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• cbio-jupyter

  Public
  JavaScript

  •1•1•0•0•Updated Aug 23, 2024Aug 23, 2024

• clinical-data-dictionary

  Public
  Clinical Attribute Web Service for retrieving clinical attribute names and metadata.

  Java

  •8•6•4•3•Updated Aug 2, 2024Aug 2, 2024

• codebook

  Public
  A community shared resource of Python and R Notebooks that utilize the cBioPortal API for various analysis recipes

  Jupyter Notebook

  •14•9•2•0•Updated May 24, 2024May 24, 2024