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    31 repositories

    • pycortex

      Public
      Pycortex is a python-based toolkit for surface visualization of fMRI data
      pythonneuroimagingfmrisurface-visualization
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •145•645•97•8•Updated Nov 24, 2025Nov 24, 2025

    • himalaya

      Public
      Multiple-target linear models - CPU/GPU
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•99•4•3•Updated Nov 24, 2025Nov 24, 2025

    • voxelwise_tutorials

      Public
      Voxelwise Encoding Model tutorials from the Gallant lab.
      neuroimagingfmrifmri-data-analysisencoding-models
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •14•88•1•0•Updated Nov 24, 2025Nov 24, 2025

    • pymoten

      Public
      Motion energy features from video
      computer-visionneurosciencegabor-filtersvideo-featuresspatiotemporal-energy-model
      Python
      •
      BSD 2-Clause "Simplified" License
      •12•36•5•4•Updated Nov 24, 2025Nov 24, 2025

    • cottoncandy

      Public
      sugar for s3
      pythons3google-drivecloud-storagenumpy-arrays
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •16•34•18•1•Updated Nov 24, 2025Nov 24, 2025

    • gallantlab.github.io

      Public
      The web home of the Gallant lab at UC Berkeley
      HTML
      •
      MIT License
      •1•1•0•0•Updated Nov 14, 2025Nov 14, 2025

    • vem-review

      Public
      Code for the paper "Encoding models in functional magnetic resonance imaging: the Voxelwise Encoding Model framework"
      neuroimagingfmriencoding-model
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Sep 29, 2025Sep 29, 2025

    • viewer-shortclips-group

      Public
      Group average viewer for shortclips data
      HTML
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • viewer-retinotopy-demo

      Public
      Brain viewer with retinotopy demo
      HTML
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • Fast-Pairwise

      Public
      parallel pairwise distances
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 31, 2025Mar 31, 2025

    • viewer-stories-group

      Public
      Pycortex viewer of group-averaged semantic maps
      HTML
      •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • Eyetracking

      Public
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •1•4•1•0•Updated Sep 10, 2024Sep 10, 2024

    • viewer-chen-2024

      Public
      Brain viewers for Chen et al., 2024 "The Cortical Representation of Language Timescales is Shared between Reading and Listening"
      1•0•0•0•Updated May 25, 2024May 25, 2024

    • headcase-pipeline

      Public
      A pipeline to generate subject-specific headcases for fMRI scanning
      fmrineuromaging
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•7•1•0•Updated May 16, 2024May 16, 2024

    • viewer-deniz-2019

      Public
      Repository for the brain viewer for Deniz et al., 2019
      1•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • hce_v4

      Public
      Repository for the Hierarchical Convolutional Energy Model of V4
      Python
      •
      MIT License
      •0•1•1•0•Updated Mar 12, 2024Mar 12, 2024

    • tikreg

      Public
      Tikhonov regression in python
      Python
      •
      Other
      •11•32•1•0•Updated Nov 14, 2023Nov 14, 2023

    • webapp-tutorial

      Public
      HTML
      •0•1•0•0•Updated May 3, 2023May 3, 2023

    • viewer-cukur-2013

      Public
      Brain viewer for Cukur et al., 2013
      1•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • viewer-huth-2012

      Public
      Brain viewer for Huth et al., 2012
      HTML
      •1•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • viewer-cortical-anatomy

      Public
      Brain viewer for cortical anatomy example
      HTML
      •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • viewer-lescroart-2018

      Public
      Brain viewer of Lescroart & Gallant, 2018
      HTML
      •0•1•0•0•Updated Mar 31, 2023Mar 31, 2023

    • viewer-huth-2016

      Public
      Repository containing the brain viewer for Huth et al., 2016
      HTML
      •0•0•1•0•Updated Mar 31, 2023Mar 31, 2023

    • vl_interface

      Public
      Python
      •3•7•1•0•Updated Nov 8, 2021Nov 8, 2021

    • pyrcca

      Public
      Regularized kernel canonical correlation analysis in Python
      Python
      •
      Other
      •73•258•8•0•Updated Jul 6, 2021Jul 6, 2021

    • milp_experimental_design

      Public
      Design of Complex Experiments using Mixed Integer Linear Programming
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •2•16•1•0•Updated Feb 2, 2021Feb 2, 2021

    • state-space

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 12, 2020Sep 12, 2020

    • realtimefmri

      Public
      Real-time collection, preprocessing, and analysis of fMRI data in Python
      Python
      •4•17•5•0•Updated Jan 30, 2020Jan 30, 2020

    • motion_energy_matlab

      Public
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •17•35•3•0•Updated Feb 20, 2018Feb 20, 2018

    • ieee-hackathon

      Public
      code for the 2016 IEEE SMC hackathon in Budapest, Hungary
      Jupyter Notebook
      •
      Other
      •3•3•0•0•Updated Oct 7, 2016Oct 7, 2016