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*-vsearch: --maxrejects should not be all by default

good first issueGood for newcomersGood for newcomers

Status: Open.

#215 In qiime2/q2-feature-classifier;

· colinbrislawn opened on Jun 23, 2025

Docs: blastn does search the full database every time

Status: Open.

#207 In qiime2/q2-feature-classifier;

· colinbrislawn opened on Nov 1, 2024

investigate alternative serialization format for classifiers to improve security

Status: Open.

#202 In qiime2/q2-feature-classifier;

· gregcaporaso opened on May 14, 2024

Utilize one database instance for multiple classification jobs

cottonwood

Status: Open.

#190 In qiime2/q2-feature-classifier;

· valentynbez opened on Apr 30, 2023

Read orientation auto detection failure

good first issueGood for newcomersGood for newcomers

HacktoberfestGood fit for the Hacktoberfest challengeGood fit for the Hacktoberfest challenge

Status: Open.

#177 In qiime2/q2-feature-classifier;

· wasade opened on Apr 15, 2022

BUG: _autotune_reads_per_batch fails when input is empty

bug-sev:1|negligible

bug-type:1|cosmeticUX is less than ideal; something is superficially wrong.UX is less than ideal; something is superficially wrong.

diff:2|intermediateA modest understanding of the languages involved and platform is required.A modest understanding of the languages involved and platform is required.

lang:pythonPython 3Python 3

scope:0|this-projectNo other repositories are impacted.No other repositories are impacted.

src:forumFrom the QIIME 2 Forum.From the QIIME 2 Forum.

time:1|shortShould not take very much time to complete (assuming familiarity).Should not take very much time to complete (assuming familiarity).

type:bugSomething is wrong.Something is wrong.

weight:1|lowIt is definitely happening in the future.It is definitely happening in the future.

Status: Open.

#175 In qiime2/q2-feature-classifier;

· nbokulich opened on Dec 13, 2021

classify-sklearn orientation detector will raise confidence error

good first issueGood for newcomersGood for newcomers

Status: Open.

#159 In qiime2/q2-feature-classifier;

· nbokulich opened on Mar 22, 2020

pop from empty list error when taxonomy label not complete

bug-sev:2|low

type:bugSomething is wrong.Something is wrong.

Status: Open.

#93 In qiime2/q2-feature-classifier;

· BenKaehler opened on Oct 18, 2017

No way to figure out read orientation used after executing an action

enhancement

Status: Open.

#88 In qiime2/q2-feature-classifier;

· ElDeveloper opened on Sep 6, 2017