Skip to content

Navigation Menu

Appearance settings

rat-genome-database

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Rat Genome Database

7 followers
rgd.web@mcw.edu

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All ActionScript HTML Java JavaScript Perl PHP Shell Vue

Sort

Select order

Last updated Name Stars

Showing 10 of 154 repositories

ncbi-gene-pipeline Public
Load nucleotide and protein sequences for genes, all species, from NCBI.

rat-genome-database/ncbi-gene-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated May 11, 2026
clinvar-pipeline Public
Loads variants from ClinVar into RGD database. Creates disease annotations to variants and also for genes, based on orthology.

rat-genome-database/clinvar-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
strain-vt-annotation-pipeline Public
propagates VT annotations from QTLs to associated strains

rat-genome-database/strain-vt-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
gwas-annotation-pipeline Public
create QTL and variant annotations on the importet GWAS data

rat-genome-database/gwas-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
full-annot-index-pipeline Public
Updates FULL_ANNOT_INDEX table: big auxiliary table used to speed up many annotation queries used by RGD tools.

rat-genome-database/full-annot-index-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
protein-qc-pipeline Public

rat-genome-database/protein-qc-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
gwas-catalog-pipeline Public
Import the data from the GWAS Catalog

rat-genome-database/gwas-catalog-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
elastic-search-indexer-pipeline Public
Pipeline to create elastic search indexes.

rat-genome-database/elastic-search-indexer-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated May 11, 2026
rgd-annotation-files Public
GO annotation files in GAF, GPAD and GPI format

rat-genome-database/rgd-annotation-files’s past year of commit activity

0 GPL-3.0 0 1 0 Updated May 9, 2026

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.