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1. pipelines-plan pipelines-plan Public

   This repo contains the YAML plan (and s/w envs) for a benchmark where methods are "one long strand" (start to finish pipelines; input: HDF5 files, output: PCAs, clusters, etc.)

   Shell 2 2

2. pipelines-py pipelines-py Public

   This repo implements Python-based pipelines for the Omnibenchmark

   Python 1

3. datasets datasets Public

   This repo is an omnibenchmark module that does data loading tasks for the benchmark

   R

4. pipelines-r pipelines-r Public

   This repo implements R-based pipelines for scrna-seq benchmark.

   R 1

5. split-stages-plan split-stages-plan Public

   This repo contains the YAML plan (and s/w envs) for a benchmark where methods are split into reasonable stages (tba: QC, HVGs, PCA, clustering)

   Shell

6. metrics metrics Public

   This repo is an omnibenchmark module that does metrics calculations for the benchmark

   Python