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Wilcoxon refactor#636

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Intron7 wants to merge 19 commits into
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wilcoxon-refactor
Open

Wilcoxon refactor#636
Intron7 wants to merge 19 commits into
mainfrom
wilcoxon-refactor

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@Intron7 Intron7 commented Apr 24, 2026

Implement a better GPU accelerated version of wilcoxon in rapids-singlecell inspired by the super fast illico verison.

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codecov-commenter commented Apr 24, 2026

Codecov Report

❌ Patch coverage is 81.24031% with 121 lines in your changes missing coverage. Please review.
✅ Project coverage is 87.41%. Comparing base (c785fbb) to head (f8c00d8).
⚠️ Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
...s_singlecell/tools/_rank_genes_groups/_wilcoxon.py 79.12% 91 Missing ⚠️
...apids_singlecell/tools/_rank_genes_groups/_core.py 80.88% 26 Missing ⚠️
...pids_singlecell/tools/_rank_genes_groups/_utils.py 87.87% 4 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #636      +/-   ##
==========================================
- Coverage   88.91%   87.41%   -1.51%     
==========================================
  Files         103      103              
  Lines        8464     8953     +489     
==========================================
+ Hits         7526     7826     +300     
- Misses        938     1127     +189     
Files with missing lines Coverage Δ
...ds_singlecell/tools/_rank_genes_groups/__init__.py 87.95% <100.00%> (+5.49%) ⬆️
...ecell/tools/_rank_genes_groups/_wilcoxon_binned.py 83.33% <100.00%> (-0.24%) ⬇️
...pids_singlecell/tools/_rank_genes_groups/_utils.py 68.04% <87.87%> (-17.88%) ⬇️
...apids_singlecell/tools/_rank_genes_groups/_core.py 73.66% <80.88%> (-18.07%) ⬇️
...s_singlecell/tools/_rank_genes_groups/_wilcoxon.py 80.63% <79.12%> (-16.99%) ⬇️

... and 1 file with indirect coverage changes

@Intron7 Intron7 marked this pull request as ready for review June 3, 2026 09:40
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2 participants