biocal-cli

Biological Data calculation using Command Line Interface scripts.

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
deprecated		deprecated
dipGenome		dipGenome
est-sfs		est-sfs
genome_annotation		genome_annotation
loter		loter
.DS_Store		.DS_Store
ORF_len.py		ORF_len.py
README.md		README.md
beagle_heterozygosity.py		beagle_heterozygosity.py
beagle_heterozygosity_all.py		beagle_heterozygosity_all.py
cal_AI_3pop.py		cal_AI_3pop.py
cal_AI_4pop.py		cal_AI_4pop.py
cal_ASE_from_vcf.py		cal_ASE_from_vcf.py
cal_Tau.py		cal_Tau.py
cal_U_ABC.py		cal_U_ABC.py
cal_U_ABCD.py		cal_U_ABCD.py
cal_ZscorePvalue.py		cal_ZscorePvalue.py
cal_allele_freq_from_vcf.py		cal_allele_freq_from_vcf.py
cal_angsd_JackKnife_Dstat.py		cal_angsd_JackKnife_Dstat.py
cal_box_outlier.py		cal_box_outlier.py
cal_cutoff.py		cal_cutoff.py
cal_empirical_Pvalue.py		cal_empirical_Pvalue.py
cal_fasta_length.py		cal_fasta_length.py
cal_fst.py		cal_fst.py
cal_geneticLoad.py		cal_geneticLoad.py
cal_minimap2_PAF_coverage.py		cal_minimap2_PAF_coverage.py
cal_norm_isf.py		cal_norm_isf.py
cal_pca.py		cal_pca.py
cal_vcf_SNPdist.py		cal_vcf_SNPdist.py
cal_vcf_depth.py		cal_vcf_depth.py
classify_majorAllele.py		classify_majorAllele.py
classify_major_minor.py		classify_major_minor.py
countBAM_het_counts.py		countBAM_het_counts.py
count_allele_from_vcf.py		count_allele_from_vcf.py
count_ref_freq.py		count_ref_freq.py
estimate_depth_range.py		estimate_depth_range.py
filterSitesInBed.py		filterSitesInBed.py
filter_best_maf_alignment.py		filter_best_maf_alignment.py
filter_blast_bitScore.py		filter_blast_bitScore.py
filter_blast_qcov.py		filter_blast_qcov.py
filter_longest_mRNA.py		filter_longest_mRNA.py
filter_snp_interval.py		filter_snp_interval.py
find_unfinished.py		find_unfinished.py
groupTreemix.py		groupTreemix.py
kmer_counts.py		kmer_counts.py
lncRNA_predict.py		lncRNA_predict.py
loter_multiRegions_old.py		loter_multiRegions_old.py
maf_majorAllele.py		maf_majorAllele.py
maf_query_majorAllele.py		maf_query_majorAllele.py
mergeBed_aggcount.py		mergeBed_aggcount.py
mergeBed_max.py		mergeBed_max.py
stat_Sprime.py		stat_Sprime.py
stat_bam_reads_refalt.py		stat_bam_reads_refalt.py
stat_fastqGC_count.py		stat_fastqGC_count.py
stat_geneFeatures.py		stat_geneFeatures.py
stat_rfmix_msp.py		stat_rfmix_msp.py

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