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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.1k 247

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 483 112

  3. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 411 51

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 397 66

  5. scib scib Public

    Benchmarking analysis of data integration tools

    Python 400 74

  6. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 328 40

Repositories

Showing 10 of 251 repositories
  • rapids_singlecell-reproducibility Public
    theislab/rapids_singlecell-reproducibility’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Jan 18, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Jan 18, 2026
  • CellFlow Public

    Modeling complex perturbations with CellFlow

    theislab/CellFlow’s past year of commit activity
    Python 109 18 49 15 Updated Jan 18, 2026
  • idtrack Public

    Cross-Temporal and Cross-Database Biological Identifier Mapping

    theislab/idtrack’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 1 1 0 Updated Jan 18, 2026
  • multigrate Public

    Multigrate: multiomic data integration for single-cell genomics

    theislab/multigrate’s past year of commit activity
    Python 30 BSD-3-Clause 9 5 2 Updated Jan 18, 2026
  • ehrapy-tutorials Public

    Tutorials for ehrapy

    theislab/ehrapy-tutorials’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 2 0 0 Updated Jan 17, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 8 Apache-2.0 5 12 2 Updated Jan 17, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 328 Apache-2.0 40 28 (1 issue needs help) 2 Updated Jan 16, 2026
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices’s past year of commit activity
    Jupyter Notebook 1,113 247 77 2 Updated Jan 16, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity
    Python 10 Apache-2.0 2 5 3 Updated Jan 15, 2026
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