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Mar 27, 2026 - Python
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immunogenomics
Here are 9 public repositories matching this topic...
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
bioinformatics immunogenomics immunogenicity-prediction cancer-immunology netmhciipan netmhcpan neoantigen-annotation neoantigens
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Jan 27, 2026 - Python
🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
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Mar 11, 2025 - Jupyter Notebook
Comparison of gene usage in immune repertoires under different biological conditions
immunology high-throughput-sequencing immunoglobulin differential-gene-expression immunoinformatics differential-analysis vdj-recombination tcr-repertoire immune-repertoires immunological-bioinformatics immunogenomics immune-repertoire bcr-repertoire immune-repertoire-analysis b-cell-receptor
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Dec 3, 2025 - R
R function to generate a circos-style ggplot from single-cell TCR data.
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Jan 27, 2022 - R
The disTIL immunoprofiling toolkit
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Nov 22, 2021 - Common Workflow Language
Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.
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Jul 1, 2022 - Jupyter Notebook
scLASER: Single-Cell Longitudinal Simulation and Time-Dependent Association Detection
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Jan 8, 2026 - HTML
Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.
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Jul 2, 2022 - Jupyter Notebook
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