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@uw-loci

UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

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  1. curvelets curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    MATLAB 25 18

  2. loci-scripts loci-scripts Public

    Scripts and macros for LOCI scientific problems

    Shell

  3. visbio-imagej visbio-imagej Public

    ImageJ plugins for 3D visualization using the VisAD toolkit

    Java 1

  4. misc-plugins misc-plugins Public

    Miscellaneous ImageJ plugins

    Java 2 1

  5. search-image-sc search-image-sc Public

    Image.sc search service

    Python

Repositories

Showing 10 of 110 repositories
  • EBEAM_dashboard Public

    EBEAM System GUI

    uw-loci/EBEAM_dashboard’s past year of commit activity
    Python 7 1 0 5 Updated Jan 5, 2026
  • qupath-extension-qpsc Public

    Java based extension for QuPath allowing control of a microscope through MicroManager

    uw-loci/qupath-extension-qpsc’s past year of commit activity
    Java 0 0 0 0 Updated Jan 5, 2026
  • cellcast Public

    A recast of cell segmentation models built on the Burn deep learning framework.

    uw-loci/cellcast’s past year of commit activity
    Rust 4 MIT 0 1 0 Updated Dec 30, 2025
  • Flamingo_Control Public

    Controlling a Flamingo microscope from Python

    uw-loci/Flamingo_Control’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Dec 30, 2025
  • data-and-code-for-improved-interface-paper Public
    uw-loci/data-and-code-for-improved-interface-paper’s past year of commit activity
    MATLAB 0 0 0 0 Updated Dec 23, 2025
  • waveAnalysis_GUI Public Forked from zacswider/waveAnalysis

    Python tools for batch analysis of oscillatory dynamics

    uw-loci/waveAnalysis_GUI’s past year of commit activity
    Python 0 4 1 1 Updated Dec 22, 2025
  • QPSC Public

    QuPath Scope Control - Annotation-driven targeted microscopy acquisition from within QuPath

    uw-loci/QPSC’s past year of commit activity
    0 1 0 0 Updated Dec 19, 2025
  • qupath-extension-tiles-to-pyramid Public

    An extension to allow the creation of a pyramidal image file from individual tiles, based on known tile positions.

    uw-loci/qupath-extension-tiles-to-pyramid’s past year of commit activity
    Java 0 MIT 1 0 0 Updated Dec 16, 2025
  • knob-box Public

    EBEAM Knob Box firmware

    uw-loci/knob-box’s past year of commit activity
    C++ 1 1 0 2 Updated Dec 12, 2025
  • curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    uw-loci/curvelets’s past year of commit activity
    MATLAB 25 18 26 1 Updated Dec 9, 2025
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