Bio-RNA-Barriers

This module provides auxiliary classes to parse, query, manipulate and print
the files generated by Barriers, a tool to compute RNA energy landscapes
and folding kinetics developed at Theoretical Biochemistry Group (TBI) at the
University of Vienna. Note that this module is not written and maintained
by the authors of Barriers.

Supports the result file (written to STDOUT by Barriers) as well as rate
matrices in binary and text format. Properties like the number of minima or,
for each minima, their fathers and children, connectedness, and basin sizes
can be queried.

Rate matrices can be manipulated easily, e. g. to remove or keep certain
states or to convert between binary and text representation.


INSTALLATION

To install this module, run the following commands:

	perl Build.PL
	./Build
	./Build test
	./Build install


SUPPORT AND DOCUMENTATION

After installing, you can find documentation for this module with the
perldoc command.

    perldoc Bio::RNA::Barriers

You can also look for information at:

    Github, the official repository
        https://github.com/xileF1337/Bio-RNA-Barriers

    RT, CPAN's request tracker (report bugs here)
        https://rt.cpan.org/NoAuth/Bugs.html?Dist=Bio-RNA-Barriers

    AnnoCPAN, Annotated CPAN documentation
        http://annocpan.org/dist/Bio-RNA-Barriers

    CPAN Ratings
        https://cpanratings.perl.org/d/Bio-RNA-Barriers

    Search CPAN
        https://metacpan.org/release/Bio-RNA-Barriers


LICENSE AND COPYRIGHT

Copyright (C) 2019-2021 Felix Kuehnl

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see L<http://www.gnu.org/licenses/>.