Skip to content

Unmerged pairs handling#219

Open
A-meara wants to merge 2 commits intoqiime2:devfrom
A-meara:dev
Open

Unmerged pairs handling#219
A-meara wants to merge 2 commits intoqiime2:devfrom
A-meara:dev

Conversation

@A-meara
Copy link
Copy Markdown

@A-meara A-meara commented Dec 20, 2025

Adds support for classifying unmerged paired-end reads.

Changes

  • Added a transformer to convert UnmergedPairs to DNAFASTAFormat, cleaning sequences by removing runs of N characters (runs produced from new dada2 parameter, see dada2#189 )
  • Updated classify_sklearn to additionally accept UnmergedPairs as input

@nbokulich nbokulich added stat:DO-NOT-MERGE Please do not merge this until this label has been removed. stat:blocked This cannot be resolved until something else has changed. labels Dec 22, 2025
@cherman2 cherman2 moved this from Needs Triage to Needs Prioritization in QIIME 2 - Triage 🚑 Jan 7, 2026
@github-project-automation github-project-automation Bot moved this to Backlog in 2026.4 🌱 Jan 30, 2026
@colinvwood colinvwood moved this from Backlog to In Development in 2026.4 🌱 Jan 30, 2026
@lizgehret lizgehret removed this from 2026.4 🌱 Apr 23, 2026
@github-project-automation github-project-automation Bot moved this to Backlog in 2026.7 🐐 Apr 23, 2026
@lizgehret lizgehret moved this from Backlog to In Development in 2026.7 🐐 Apr 23, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

stat:blocked This cannot be resolved until something else has changed. stat:DO-NOT-MERGE Please do not merge this until this label has been removed.

Projects

Status: In Development

Development

Successfully merging this pull request may close these issues.

7 participants